STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0795Acetoin utilization family protein; Deacetylases including yeast histone deacetylase and acetoin utilization protein (302 aa)    
Predicted Functional Partners:
XCC0796
Uncharacterized protein
       0.812
XCC0797
annotation not available
       0.777
XCC2764
Proteins containing SET domain
  
 
 0.638
XCC3988
Uncharacterized protein; Acyl-CoA synthetase (NDP forming)
 
    0.638
surA
Chaperone SurA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
  
   0.621
XCC0799
VisC protein; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
  
   0.618
ubiH
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
  
   0.618
XCC2697
Uncharacterized protein; Histone acetyltransferase HPA2 and related acetyltransferases
 
     0.604
sseA
Rhodanese-related sulfurtransferase
      0.604
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family
 
 
 0.574
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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