STRINGSTRING
phuR protein (Xanthomonas campestris campestris) - STRING interaction network
"phuR" - Outer membrane receptor proteins, mostly Fe transport in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phuROuter membrane receptor proteins, mostly Fe transport (778 aa)    
Predicted Functional Partners:
XCC0770
Uncharacterized protein (307 aa)
 
          0.921
XCC0767
annotation not available (81 aa)
   
   
  0.876
XCC0769
annotation not available (213 aa)
   
   
  0.862
XCC3209
Outer membrane receptor proteins mostly Fe transport (926 aa)
   
   
  0.620
piuB
annotation not available (839 aa)
   
   
  0.602
fecI
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily (169 aa)
 
     
  0.565
XCC3075
annotation not available (388 aa)
   
          0.564
fpvA1
Outer membrane receptor for monomeric catechols (738 aa)
   
   
  0.556
tonB
Periplasmic protein TonB, links inner and outer membranes (224 aa)
 
 
  0.554
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (354 aa)
           
  0.551
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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