STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgdD-galactose 1-dehydrogenase; Predicted dehydrogenases and related proteins (317 aa)    
Predicted Functional Partners:
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer
 
 
 0.933
bga3
Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family
    
 0.906
bga1
Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family
    
 0.906
bga2
Beta-galactosidase
    
  0.901
dgoK
2-keto-3-deoxy-galactonokinase
 
     0.647
gltB
Glutamate synthase, alpha subunit; Glutamate synthase domain 2
   
  
 0.574
XCC1745
Regucalcin; Gluconolactonase
 
    0.496
metN
Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
   
 
 0.463
XCC2170
Iron dependent repressor; Mn-dependent transcriptional regulator
    
 
 0.457
dgoA
4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase
 
     0.428
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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