STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0714annotation not available (105 aa)    
Predicted Functional Partners:
XCC0715
annotation not available
     0.991
XCC0716
Uncharacterized protein
       0.845
XCC0955
Peptidyl-Asp metalloendopeptidase; Metalloprotease, specifically cleaves on the N-terminal side of aspartyl, glutamyl and cysteic acid residues
  
     0.647
hrpF
HrpF protein; Pathogenicity-related export of effector proteins to host plants
  
     0.589
hpaP
annotation not available
  
     0.579
XCC0431
Nuclease; Predicted extracellular nuclease
  
     0.536
hrcQ
HrcQ protein; Type III secretory pathway protein
  
     0.534
wxcD
wxcD; Glycosyltransferase
  
     0.501
V
annotation not available
  
     0.486
XCC3374
annotation not available
  
     0.477
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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