STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0709Uncharacterized protein; Predicted membrane-bound metal-dependent hydrolases (179 aa)    
Predicted Functional Partners:
dld
FAD/FMN-containing dehydrogenases
       0.898
XCC0711
Unnamed protein product
 
     0.829
XCC0710
UPF0102 protein XCC0710; Predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family
       0.813
XCC0707
annotation not available
       0.774
XCC1169
annotation not available
  
     0.621
rsmI
Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
       0.579
creC
Two-component system sensor protein; Signal transduction histidine kinase
  
    0.566
creD
Inner membrane protein involved in colicin E2 resistance
  
     0.525
XCC1401
annotation not available
  
     0.447
XCC2631
annotation not available
  
     0.425
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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