STRINGSTRING
def1 protein (Xanthomonas campestris campestris) - STRING interaction network
"def1" - Peptide deformylase 1 in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
def1Peptide deformylase 1; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (171 aa)    
Predicted Functional Partners:
rpmA
Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family (86 aa)
 
 
  0.744
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (119 aa)
 
 
  0.732
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (106 aa)
   
 
  0.705
rplX
50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (105 aa)
   
      0.688
ctc
50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance (209 aa)
 
 
 
  0.686
rplI
50S ribosomal protein L9; Binds to the 23S rRNA (149 aa)
   
 
  0.671
rpsI
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family (130 aa)
   
 
  0.668
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy (164 aa)
     
 
  0.664
rpmI
Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family (65 aa)
   
      0.661
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (142 aa)
   
 
  0.661
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
Server load: low (26%) [HD]