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alkB protein (Xanthomonas campestris campestris) - STRING interaction network
"alkB" - Alkylated DNA repair protein in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkBAlkylated DNA repair protein (199 aa)    
Predicted Functional Partners:
Ada
DNA methylation and regulatory protein Ada or; 3-methyladenine DNA glycosylase (521 aa)
   
   
  0.707
XCC3879
Oxidoreductase; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 (358 aa)
   
     
  0.680
etf-QO
Flavoprotein-ubiquinone oxidoreductase; Dehydrogenases (flavoproteins) (549 aa)
              0.624
pheC
Cyclohexadienyl dehydratase; ABC-type amino acid transport/signal transduction systems periplasmic component/domain (256 aa)
           
  0.603
wxcX
Uncharacterized protein WxcX; Possibly involved in lipopolysaccharides (LPS) biosynthesis (695 aa)
              0.588
glcP
MFS transporter; Permeases of the major facilitator superfamily; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family (481 aa)
           
  0.482
XCC1590
P-protein; Prephenate dehydratase (406 aa)
           
  0.432
metG
Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (694 aa)
     
   
  0.405
ogt
Methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction- the enzyme is irreversibly inactivated (180 aa)
 
   
  0.405
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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