STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uptEOuter membrane protein; RTX toxins and related Ca2+-binding proteins (296 aa)    
Predicted Functional Partners:
uptD
Outer membrane protein; F0F1-type ATP synthase b subunit
 
    0.960
XCC2078
annotation not available
 
 
 
 0.815
XCC1144
annotation not available
  
     0.784
XCC2931
annotation not available
  
   
 0.782
XCC1572
annotation not available
  
     0.781
XCC0986
annotation not available
  
    0.781
XCC3794
annotation not available
  
     0.780
ilvM
Acetolactate synthase (isozyme II) small (regulatory) subunit
  
     0.778
XCC2621
annotation not available
  
     0.778
XCC0484
Two-component system regulatory protein; FOG: EAL domain
 
   
 0.776
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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