STRINGSTRING
uptD protein (Xanthomonas campestris campestris) - STRING interaction network
"uptD" - Outer membrane protein in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uptDOuter membrane protein; F0F1-type ATP synthase b subunit (158 aa)    
Predicted Functional Partners:
uptE
Outer membrane protein; RTX toxins and related Ca2+-binding proteins (296 aa)
 
        0.960
XCC2715
annotation not available (153 aa)
   
          0.784
XCC2192
annotation not available (101 aa)
   
          0.783
XCC2621
annotation not available (208 aa)
   
          0.779
XCC2762
annotation not available (198 aa)
   
          0.779
XCC0274
annotation not available (143 aa)
   
          0.778
XCC2267
annotation not available (229 aa)
   
          0.777
XCC3901
annotation not available (159 aa)
   
          0.776
XCC2078
annotation not available (597 aa)
   
          0.775
XCC4090
annotation not available (299 aa)
   
          0.774
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
Server load: low (35%) [HD]