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uptC protein (Xanthomonas campestris campestris) - STRING interaction network
"uptC" - Type II secretion system protein-like protein in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uptCType II secretion system protein-like protein; Tfp pilus assembly protein ATPase PilU (377 aa)    
Predicted Functional Partners:
CAP50436.1
Type II secretory pathway, component PulF (419 aa)
   
   
  0.881
xpsF
Type II secretion system protein F; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (405 aa)
   
   
  0.812
pilD
Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue (287 aa)
   
   
  0.792
xcsF
Type II secretory pathway component PulF (398 aa)
   
   
  0.779
CAP50306.1
Type II secretory pathway, component HofQ (626 aa)
   
   
  0.675
uptE
Outer membrane protein; RTX toxins and related Ca2+-binding proteins (296 aa)
              0.660
uptD
Outer membrane protein; F0F1-type ATP synthase b subunit (158 aa)
              0.628
pilT
Twitching motility protein; Tfp pilus assembly protein pilus retraction ATPase PilT (345 aa)
 
   
0.616
pilN
Tfp pilus assembly protein PilN (259 aa)
   
   
  0.612
pilO
Tfp pilus assembly protein PilO (221 aa)
   
   
  0.591
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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