STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uptCType II secretion system protein-like protein; Tfp pilus assembly protein ATPase PilU (377 aa)    
Predicted Functional Partners:
CAP50436.1
Type II secretory pathway, component PulF
  
  
 0.881
xpsF
Type II secretion system protein F; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
  
  
 0.812
pilD
Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
  
  
 0.792
xcsF
Type II secretory pathway component PulF
  
  
 0.779
CAP50306.1
Type II secretory pathway, component HofQ
  
  
 0.675
uptE
Outer membrane protein; RTX toxins and related Ca2+-binding proteins
       0.660
uptD
Outer membrane protein; F0F1-type ATP synthase b subunit
       0.628
pilT
Twitching motility protein; Tfp pilus assembly protein pilus retraction ATPase PilT
 
  
0.616
pilN
Tfp pilus assembly protein PilN
  
  
 0.612
pilO
Tfp pilus assembly protein PilO
  
  
 0.591
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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