STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0586GAF domain-containing protein (162 aa)    
Predicted Functional Partners:
mmuM
Homocysteine S-methyltransferase; Methionine synthase I (cobalamin-dependent),methyltransferase domain
    
  0.909
tyrB
Aminotransferase; Aspartate/tyrosine/aromatic aminotransferase
     
  0.900
metE
5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase; Methionine synthase II (cobalamin-independent)
     
  0.900
metH1
Methionine synthase I (cobalamin-dependent) methyltransferase domain
    
  0.900
metH2
5-methyltetrahydrofolate-homocysteine methyltransferase; Methionine synthase I cobalamin-binding domain
     
  0.900
metK
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
     
  0.900
XCC0585
annotation not available
       0.898
msrA
Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
   
 
 0.605
bioD
ATP-dependent dethiobiotin synthetase BioD; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
       0.584
prc
Periplasmic protease; Belongs to the peptidase S41A family
 
    0.423
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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