STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycfVABC transporter ATP-binding protein; ABC-type antimicrobial peptide transport system, ATPase component (239 aa)    
Predicted Functional Partners:
XCC0566
ABC transporter ATP-binding protein; ABC-type antimicrobial peptide transport system, permease component
 
 0.989
XCC0565
ABC transporter permease; ABC-type antimicrobial peptide transport system, permease component
 
 0.976
ybjY
ABC transporter permease; Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
 
 
 0.939
XCC0562
Histidine kinase/response regulator hybrid protein-like protein; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation
 
   
 0.794
XCC3914
Uncharacterized protein; ABC-type antimicrobial peptide transport system, permease component
 
 0.723
XCC3913
Uncharacterized protein; ABC-type antimicrobial peptide transport system, permease component
 
 
 0.702
XCC0563
Histidine kinase/response regulator hybrid protein; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
 
     0.627
ftsY
Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components
 
  
 0.614
ffh
Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...]
 
  
 0.609
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
  
    0.576
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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