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ompW3 protein (Xanthomonas campestris campestris) - STRING interaction network
"ompW3" - Outer membrane protein W in Xanthomonas campestris campestris
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompW3Outer membrane protein W (225 aa)    
Predicted Functional Partners:
XCC0540
Uncharacterized protein; G-T/U mismatch-specific DNA glycosylase (174 aa)
              0.656
mopB
Outer membrane protein and related peptidoglycan-associated (lipo)proteins; Belongs to the ompA family (365 aa)
 
     
  0.621
fadL
Outer membrane protein; Long-chain fatty acid transport protein (450 aa)
   
     
  0.589
tolB
Protein TolB; Involved in the TonB-independent uptake of proteins (439 aa)
           
  0.583
sdhB
Succinate dehydrogenase/fumarate reductase Fe-S protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family (260 aa)
     
 
  0.565
lptE
LPS-assembly lipoprotein LptE; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane (216 aa)
   
     
  0.508
sdhA
Succinate dehydrogenase/fumarate reductase flavoprotein subunits; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily (596 aa)
     
      0.507
XCC0537
annotation not available (195 aa)
              0.505
XCC0538
annotation not available (201 aa)
              0.505
sod3
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (234 aa)
           
  0.501
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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