STRINGSTRING
sndH protein (Xanthomonas campestris campestris) - STRING interaction network
"sndH" - Glucose/sorbosone dehydrogenases in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sndHGlucose/sorbosone dehydrogenases (444 aa)    
Predicted Functional Partners:
XCC3642
annotation not available (102 aa)
              0.595
XCC2031
Predicted membrane protein (138 aa)
 
        0.431
XCC3083
Glucose dehydrogenase (824 aa)
   
          0.425
pqqC
Pyrroloquinoline-quinone synthase; Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ (250 aa)
 
          0.409
XCC1575
Glucose dehydrogenase (820 aa)
   
          0.405
dnl
ATP-dependent DNA ligase (1001 aa)
 
          0.404
lig2
ATP-dependent DNA ligase (849 aa)
 
          0.400
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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