STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3670Uncharacterized protein; Glycosyltransferases involved in cell wall biogenesis (231 aa)    
Predicted Functional Partners:
XCC3669
Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
  
    0.607
XCC3671
Metallopeptidase; Predicted metalloendopeptidase
       0.568
CAP51797.1
annotation not available
   
 
 0.514
CAP51438.1
Unknown
  
 
 0.497
gumL
GumL protein; Pyruvylation of the outer mannose of xanthan
 
   
 0.426
XCC4239
Polysaccharide deacetylase; Uncharacterized protein containing caspase domain
  
  
 0.424
XCC2153
Two-component system sensor protein; FOG: PAS/PAC domain
 
 
 0.421
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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