STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3676Transcriptional regulator protein; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain (258 aa)    
Predicted Functional Partners:
XCC3677
annotation not available
  
 0.975
XCC3675
annotation not available
       0.738
CAP51016.1
Predicted signal transduction protein with a C-terminal ATPase domain
  
 0.703
algZ
Two-component system sensor protein; Predicted signal transduction protein with a C-terminal ATPase domain
  
 0.682
XCC2360
Signal transduction histidine kinase
  
  
 0.656
ptrA
Zinc protease; Predicted Zn-dependent peptidases
  
   
 0.628
mucD
Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain; Belongs to the peptidase S1C family
      
 0.590
XCC1267
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily
      
 0.584
rpoE5
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily
      
 0.583
pilG
Type IV pilus response regulator
  
   
 0.580
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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