STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3689Transcriptional regulator NtrC family; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains (433 aa)    
Predicted Functional Partners:
XCC3688
annotation not available
       0.845
rpoN1
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
 
   
 0.800
XCC2360
Signal transduction histidine kinase
  
 
 0.796
rpoN2
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
 
   
 0.779
ntrB
Two-component system sensor protein; Signal transduction histidine kinase nitrogen specific
 
 0.674
XCC2153
Two-component system sensor protein; FOG: PAS/PAC domain
   
 
 0.672
XCC2313
Uncharacterized protein; FOG: GAF domain
  
 
 0.547
gltB
Glutamate synthase, alpha subunit; Glutamate synthase domain 2
  
  
 0.546
XCC2592
Signal transduction histidine kinase
 
 
 0.489
XCC1185
annotation not available
   
 
 0.480
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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