STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glfUDP-galactopyranose mutase (398 aa)    
Predicted Functional Partners:
XCC3697
Unnamed protein product
  
 0.997
galE
UDP-glucose 4-epimerase
 
 
 0.990
XCC3699
Uncharacterized protein; Beta-glucosidase/6-phospho-beta- glucosidase/beta -galactosidase
     0.931
rmlC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose; Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family
  
  
 0.741
msbA5
ATP binding transporter 1; ABC-type bacteriocin/lantibiotic exporters,contain an N-terminal double-glycine peptidase domain
 
     0.721
aphB
Phytochrome-like protein; Bacteriophytochrome (light-regulated signal transduction histidine kinase)
      
 0.701
XCC2013
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose; Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family
  
  
 0.666
XCC1670
Uncharacterized protein; Isomerization of a sugar nucleotide precursor of an unidentified cell surface carbohydrate
  
  
 0.666
rbfC
O-antigen biosynthesis protein; Glycosyltransferases involved in cell wall biogenesis
  
  
 0.540
rmlB
dTDP-glucose 4,6-dehydratase; Catalyzes the dehydration of dTDP-D-glucose to form dTDP-6-deoxy-D-xylo-4-hexulose via a three-step process involving oxidation, dehydration and reduction; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily
  
 
 0.529
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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