STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msbA5ATP binding transporter 1; ABC-type bacteriocin/lantibiotic exporters,contain an N-terminal double-glycine peptidase domain (593 aa)    
Predicted Functional Partners:
XCC3699
Uncharacterized protein; Beta-glucosidase/6-phospho-beta- glucosidase/beta -galactosidase
 
     0.939
XCC3697
Unnamed protein product
 
 
 0.805
glf
UDP-galactopyranose mutase
 
     0.721
galE
UDP-glucose 4-epimerase
 
  
 0.637
XCC1082
Oxidoreductase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family
  
     0.485
XCC0172
Uncharacterized protein; Predicted permeases
    
   0.472
XCC1995
annotation not available
  
     0.439
XCC3065
annotation not available
  
     0.413
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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