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ybdR protein (Xanthomonas campestris campestris) - STRING interaction network
"ybdR" - Threonine dehydrogenase and related Zn-dependent dehydrogenases in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybdRThreonine dehydrogenase and related Zn-dependent dehydrogenases (367 aa)    
Predicted Functional Partners:
XCC0393
Transposase (404 aa)
              0.745
XCC1079
Oxidoreductase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (300 aa)
 
 
  0.724
XCC3695
Oxidoreductase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (288 aa)
 
 
  0.711
cat2
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide (701 aa)
 
 
  0.603
XCC3683
Uncharacterized protein; Mn-containing catalase (299 aa)
 
          0.596
cat3
Catalase; Belongs to the catalase family (507 aa)
   
 
  0.551
srpA
Catalase-related peroxidase; Has an organic peroxide-dependent peroxidase activity (363 aa)
   
 
  0.551
adh
Zn-dependent alcohol dehydrogenases class III (368 aa)
 
   
0.499
maeB
Malic enzyme (775 aa)
   
   
  0.498
XCC3682
Uncharacterized protein conserved in bacteria (168 aa)
 
        0.473
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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