STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3745Uncharacterized protein; Lipid A core - O-antigen ligase and related enzymes (429 aa)    
Predicted Functional Partners:
waaA
3-deoxy-D-manno-octulosonic acid transferase; Biosynthesis of the lipid A component of the lipopolysaccharides (LPS)
    
 0.820
XCC2332
annotation not available
  
     0.742
uptE
Outer membrane protein; RTX toxins and related Ca2+-binding proteins
  
     0.718
XCC2762
annotation not available
  
     0.709
XCC2621
annotation not available
  
     0.688
XCC2192
annotation not available
  
     0.684
XCC0274
annotation not available
  
     0.682
XCC1572
annotation not available
  
     0.670
XCC2715
annotation not available
  
     0.664
XCC3764
annotation not available
  
     0.658
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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