STRINGSTRING
trn2 protein (Xanthomonas campestris campestris) - STRING interaction network
"trn2" - Tropinone reductase in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trn2Tropinone reductase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (258 aa)    
Predicted Functional Partners:
XCC3759
GGDEF family protein; FOG- PAS/PAC domain (483 aa)
         
  0.849
amtB
Ammonium transporter; Ammonia permease (491 aa)
           
  0.704
CAP53309.1
annotation not available (71 aa)
              0.611
fabF1
3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP (411 aa)
 
 
  0.596
fabF2
Beta-ketoacyl-[ACP] synthase II; 3-oxoacyl-(acyl-carrier-protein) synthase; Belongs to the beta-ketoacyl-ACP synthases family (398 aa)
 
 
  0.587
fabB
3-oxoacyl-(acyl-carrier-protein) synthase; Belongs to the beta-ketoacyl-ACP synthases family (402 aa)
 
 
  0.568
XCC3999
annotation not available (257 aa)
   
 
  0.495
XCC2741
Bifunctional diaminopimelate decarboxylase/aspartate kinase; Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family (896 aa)
 
 
 
  0.482
fabZ
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs (153 aa)
 
 
  0.466
uppS
Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific); Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with (2E,6E)-farnesyl diphosphate (E,E-FPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E)-undecaprenyl diphosphate (di-trans,octa-cis-UPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide (258 aa)
   
     
  0.415
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
Server load: low (11%) [HD]