STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sppAProtease 4; Periplasmic serine proteases (ClpP class) (633 aa)    
Predicted Functional Partners:
norM
Probable multidrug resistance protein NorM; Multidrug efflux pump
     
 0.769
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde; Belongs to the NAGSA dehydrogenase family. Type 1 subfamily
  
  
 0.712
hisC1
Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
 
  
 0.685
fliC
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
      
 0.620
XCC2858
Membrane proteins related to metalloendopeptidases
      
 0.603
hisC3
Aminotransferase; Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase
  
  
 0.535
lepB
Signal peptidase I; Unnamed protein product; Belongs to the peptidase S26 family
      
 0.501
tyrA
Chorismate mutase/prephenate dehydrogenase; Prephenate dehydrogenase
 
    0.465
ppsA
Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family
  
    0.443
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy
      
 0.440
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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