STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icd2Monomeric isocitrate dehydrogenase (743 aa)    
Predicted Functional Partners:
icd1
Isocitrate/isopropylmalate dehydrogenase
     
 0.970
acnB
Aconitate hydratase B; Aconitase B; Belongs to the aconitase/IPM isomerase family
 
 
 0.933
rpfA
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
   
 0.925
sucA
2-oxoglutarate dehydrogenase complex,dehydrogenase (E1) component, and related enzymes
   
 
 0.916
purB
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
   
  0.871
CAP53331.1
annotation not available
       0.845
gltB
Glutamate synthase, alpha subunit; Glutamate synthase domain 2
  
 
 0.839
XCC3364
Aminotransferase; Aspartate/tyrosine/aromatic aminotransferase
  
 
  0.830
gltD
NADPH-dependent glutamate synthase beta chain and related oxidoreductases
   
 
 0.807
argH
Argininosuccinate lyase; Unnamed protein product
   
 
 0.803
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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