STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3784Uncharacterized protein containing LysM domain (98 aa)    
Predicted Functional Partners:
XCC3783
annotation not available
 
     0.752
queF
NADPH-dependent 7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
       0.671
CAP50306.1
Type II secretory pathway, component HofQ
   
   0.519
XCC2946
DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family
   
    0.515
pilP
Tfp pilus assembly protein PilP
   
   0.509
pilO
Tfp pilus assembly protein PilO
   
   0.506
pilM
Tfp pilus assembly protein ATPase PilM
   
   0.503
pilN
Tfp pilus assembly protein PilN
   
   0.496
pefL
Type II secretion system protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
   
   0.496
xcsF
Type II secretory pathway component PulF
   
   0.490
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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