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vanX protein (Xanthomonas campestris campestris) - STRING interaction network
"vanX" - D-alanyl-D-alanine dipeptidase in Xanthomonas campestris campestris
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vanXD-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide (258 aa)    
Predicted Functional Partners:
XCC3800
annotation not available (65 aa)
              0.842
XCC3808
Uncharacterized protein conserved in bacteria (258 aa)
          0.836
nagZ
Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides; Belongs to the glycosyl hydrolase 3 family. NagZ subfamily (331 aa)
 
 
        0.628
XCC3799
annotation not available (125 aa)
 
          0.510
XCC3802
Uncharacterized protein; Putative peptidoglycan-binding domain-containing protein (453 aa)
   
        0.452
XCC3806
annotation not available (469 aa)
   
        0.418
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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