STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3808Uncharacterized protein conserved in bacteria (258 aa)    
Predicted Functional Partners:
XCC3809
Amino acid transporters
       0.898
vanX
D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
     0.836
XCC3806
annotation not available
 
   
 0.803
XCC3807
Chloromuconate cycloisomerase; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family
 
     0.741
XCC3810
annotation not available
 
     0.662
XCC2630
annotation not available
  
     0.589
XCC0823
annotation not available
  
     0.526
XCC0025
Uncharacterized protein; Putative peptidase
  
     0.459
ampD
N-acetylmuramoyl-L-alanine amidase; Negative regulator of beta-lactamase expression
 
     0.456
XCC2215
annotation not available
  
     0.437
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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