STRINGSTRING
XCC3828 protein (Xanthomonas campestris campestris) - STRING interaction network
"XCC3828" - annotation not available in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3828annotation not available (72 aa)    
Predicted Functional Partners:
XCC3827
SURF1-like protein (241 aa)
 
        0.878
XCC3826
annotation not available (191 aa)
 
        0.817
XCC3825
Uncharacterized protein required for cytochrome oxidase assembly (387 aa)
 
        0.792
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily (300 aa)
 
        0.750
XCC4125
annotation not available (72 aa)
   
          0.534
XCC0163
Ca2+-binding protein (EF-Hand superfamily) (117 aa)
   
          0.471
XCC1488
annotation not available (303 aa)
   
          0.470
XCC1424
annotation not available (142 aa)
   
          0.448
XCC0162
Fatty-acid desaturase (409 aa)
   
          0.447
XCC2843
Uncharacterized protein (83 aa)
   
          0.423
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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