STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dpm1Dolichol-phosphate mannosyltransferase; Glycosyltransferases involved in cell wall biogenesis (240 aa)    
Predicted Functional Partners:
XCC3855
Predicted membrane protein
 
     0.928
gla
Nucleotide sugar epimerase; UDP-glucose 4-epimerase
 
 
 0.884
XCC3746
Uncharacterized protein; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
  
 0.800
XCC1119
Uncharacterized protein; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
  
 0.790
wxcL
Glycosyltransferases involved in cell wall biogenesis
  
     0.644
ugd
Predicted UDP-glucose 6-dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family
 
 
 0.641
parB
Chromosome partitioning protein; Predicted transcriptional regulators; Belongs to the ParB family
       0.592
XCC3849
ATPases involved in chromosome partitioning
       0.584
XCC3856
Uncharacterized protein
       0.552
mcrB
annotation not available
       0.509
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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