STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3855Predicted membrane protein (113 aa)    
Predicted Functional Partners:
dpm1
Dolichol-phosphate mannosyltransferase; Glycosyltransferases involved in cell wall biogenesis
 
     0.928
gla
Nucleotide sugar epimerase; UDP-glucose 4-epimerase
       0.692
XCC2390
annotation not available
  
     0.616
XCC0211
annotation not available
  
     0.600
XCC3848
annotation not available
 
     0.584
XCC3856
Uncharacterized protein
       0.555
XCC0193
annotation not available
  
     0.544
XCC1009
Uncharacterized protein; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
 
     0.543
XCC2656
annotation not available
  
     0.533
XCC2504
Uncharacterized protein
  
     0.529
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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