STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3856Uncharacterized protein (183 aa)    
Predicted Functional Partners:
XCC3855
Predicted membrane protein
       0.555
dpm1
Dolichol-phosphate mannosyltransferase; Glycosyltransferases involved in cell wall biogenesis
       0.552
XCC3797
annotation not available
  
     0.516
XCC1827
annotation not available
  
     0.469
XCC3897
annotation not available
  
     0.426
gph2
Uncharacterized protein; Predicted phosphatases
  
     0.422
avrBs2
Avirulence protein; Glycerophosphoryl diester phosphodiesterase,probable
  
     0.416
hrpB1
annotation not available
  
     0.416
gla
Nucleotide sugar epimerase; UDP-glucose 4-epimerase
       0.413
hrpD5
annotation not available
  
     0.400
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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