STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3873Uncharacterized protein conserved in bacteria (90 aa)    
Predicted Functional Partners:
comM
Competence related protein; Predicted ATPase with chaperone activity
       0.866
glnB2
Nitrogen regulatory protein PII; Belongs to the P(II) protein family
  
    0.708
XCC3260
UPF0149 protein XCC3260; Uncharacterized protein conserved in bacteria; Belongs to the UPF0149 family
  
     0.658
XCC1468
UPF0125 protein XCC1468; Uncharacterized protein conserved in bacteria; Belongs to the UPF0125 (RnfH) family
  
     0.479
mreD
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
  
     0.473
smg
Protein Smg homolog; Uncharacterized protein conserved in bacteria; Belongs to the Smg family
  
     0.469
XCC3341
Uncharacterized protein conserved in bacteria
  
     0.464
XCC3997
YcgL domain-containing protein XCC3997; Uncharacterized protein conserved in bacteria
  
     0.456
XCC3875
Outer membrane lipoprotein Blc; Bacterial lipocalin
       0.448
gcvR
Glycine cleavage system transcriptional repressor; Unnamed protein product
  
     0.406
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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