STRINGSTRING
comM protein (Xanthomonas campestris campestris) - STRING interaction network
"comM" - Competence related protein in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comMCompetence related protein; Predicted ATPase with chaperone activity (506 aa)    
Predicted Functional Partners:
XCC3873
Uncharacterized protein conserved in bacteria (90 aa)
              0.866
comF
Competence protein F; Predicted amidophosphoribosyltransferases (243 aa)
 
   
  0.801
smf
DNA processing chain A; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake (378 aa)
 
  0.734
def2
Peptide deformylase 2; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (170 aa)
          0.696
glnB2
Nitrogen regulatory protein PII; Belongs to the P(II) protein family (112 aa)
              0.677
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5’-terminal phosphate and a 3’-terminal hydroxyl group (174 aa)
 
     
  0.665
XCC0710
UPF0102 protein XCC0710; Predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family (122 aa)
 
        0.644
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family (205 aa)
         
  0.625
nthA
Nitrilase; Predicted amidohydrolase (294 aa)
           
  0.487
XCC3875
Outer membrane lipoprotein Blc; Bacterial lipocalin (185 aa)
              0.468
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
Server load: low (15%) [HD]