STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3875Outer membrane lipoprotein Blc; Bacterial lipocalin (185 aa)    
Predicted Functional Partners:
XCC3508
Outer membrane lipoprotein; Bacterial lipocalin
  
     0.729
ompW1
Outer membrane protein W
  
   
 0.550
sulA
Cell division inhibitor; Predicted nucleoside-diphosphate sugar epimerase
    0.547
comM
Competence related protein; Predicted ATPase with chaperone activity
       0.468
ompW3
Outer membrane protein W
      
 0.463
XCC3873
Uncharacterized protein conserved in bacteria
       0.448
gumP
GumP protein; Zn-dependent hydrolases, including glyoxylases
      
 0.433
rebB
annotation not available
      
 0.403
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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