STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3877Predicted signal transduction protein containing sensor and EAL domains (519 aa)    
Predicted Functional Partners:
CAP53432.1
annotation not available
       0.845
CAP50207.1
FOG: GGDEF domain
 
     0.808
XCC3486
Response regulator; FOG: GGDEF domain
 
   
 0.795
XCC1443
Uncharacterized protein; FOG: GGDEF domain
 
   
 0.775
XCC3519
GGDEF family protein; FOG: GGDEF domain
 
     0.773
XCC3759
GGDEF family protein; FOG: PAS/PAC domain
 
     0.766
XCC2731
Response regulator; FOG: GGDEF domain
 
     0.758
XCC0239
Uncharacterized protein; FOG: GGDEF domain
 
   
 0.752
CAP52102.1
FOG: GGDEF domain
 
     0.741
XCC0407
Uncharacterized protein; FOG: GGDEF domain
 
     0.740
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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