STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3921Peptidase; Predicted aminopeptidases (602 aa)    
Predicted Functional Partners:
XCC3922
Beta-lactamase related protein; Zn-dependent hydrolases including glyoxylases
       0.845
XCC4040
Uncharacterized protein conserved in bacteria
  
     0.686
XCC2407
annotation not available
  
     0.678
XCC3961
Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
  
    0.648
XCC2408
Uncharacterized protein conserved in bacteria
  
     0.638
XCC1345
Uncharacterized protein conserved in bacteria
  
     0.629
trpS
Tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp); Belongs to the class-I aminoacyl-tRNA synthetase family
       0.622
XCC1340
Outer membrane receptor proteins, mostly Fe transport
  
     0.590
XCC0272
Uncharacterized protein; Predicted methyltransferase
  
     0.555
XCC4016
Dipeptidyl-peptidase; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
 
  
 0.552
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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