STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3967Periplasmic protein TonB, links inner and outer membranes (335 aa)    
Predicted Functional Partners:
XCC0205
annotation not available
  
 
 
 0.750
XCC3405
Outer membrane receptor proteins mostly Fe transport
  
 
 0.709
XCC2431
annotation not available
  
     0.704
mopB
Outer membrane protein and related peptidoglycan-associated (lipo)proteins; Belongs to the ompA family
 
 
 
 0.696
XCC0007
Uncharacterized protein; FOG: TPR repeat
 
     0.688
XCC0193
annotation not available
  
     0.686
exbB1
Biopolymer transport protein ExbB; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates. Protects ExbD from proteolytic degradation and functionally stabilizes TonB (By similarity)
 
 
 0.682
XCC2656
annotation not available
  
     0.676
XCC2250
annotation not available
  
     0.669
XCC2390
annotation not available
  
     0.660
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
Server load: low (14%) [HD]