STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3979annotation not available (250 aa)    
Predicted Functional Partners:
XCC3978
ABC-type multidrug transport system permease component
       0.846
XCC3976
ABC transporter ATP-binding protein; ABC-type multidrug transport system ATPase component
       0.796
XCC2271
annotation not available
  
     0.602
poxF
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
       0.595
XCC3069
Uncharacterized protein
  
     0.583
CAP50440.1
Predicted spermidine synthase with an N-terminal membrane domain
  
     0.581
apbA
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
       0.549
XCC1052
annotation not available
  
     0.510
XCC2424
annotation not available
  
     0.499
XCC4186
Leucine-rich repeat (LRR) protein
  
     0.470
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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