STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fldW4-oxalomesaconate hydratase; Predicted metal-dependent hydrolase of the TIM-barrel fold (340 aa)    
Predicted Functional Partners:
fldZ
Acyl transferase; Demethylmenaquinone methyltransferase
 
  
 0.989
fldA
Uncharacterized protein conserved in bacteria
 
  
  0.985
fldY
Transcriptional regulator
 
   
 0.873
ligB
annotation not available
 
     0.856
ligA
annotation not available
 
     0.781
XCC0363
Vanillate O-demethylase oxygenase subunit; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases large terminal subunit
 
     0.567
XCC0801
annotation not available
 
     0.506
CAP53595.1
Transposase and inactivated derivatives
       0.506
CAP53594.1
Transposase and inactivated derivatives
       0.480
pobA
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
 
  
 0.470
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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