STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
czcAPutative cation efflux system, RND-component; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family (1075 aa)    
Predicted Functional Partners:
XCC4037
Cation efflux system protein; Membrane-fusion protein
 
 
 0.991
czcC
Cation efflux system protein; Outer membrane protein
 
  
 0.938
XCC4035
Uncharacterized protein; Co/Zn/Cd efflux system component
 
   
 0.919
XCC2143
Cation efflux system protein; Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
 
 0.889
czcD
Cobalt-zinc-cadmium resistance protein; Co/Zn/Cd efflux system component
  
 0.797
XCC3974
Heavy metal transporter; Co/Zn/Cd efflux system component
 
  
 0.732
oprN2
Outer membrane protein
  
 0.682
XCC1439
Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
 
 
 0.682
mexA
Multidrug resistance protein; Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
 
 
 0.676
rnD
Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family
      
 0.654
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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