STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoD1Phosphodiesterase/alkaline phosphatase D (542 aa)    
Predicted Functional Partners:
folE2
GTP cyclohydrolase FolE2; Converts GTP to 7,8-dihydroneopterin triphosphate
     
  0.900
ptps
6-pyruvoyl-tetrahydropterin synthase
     
  0.900
folB
7,8-dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
     
  0.900
folE
GTP cyclohydrolase 1; Unnamed protein product
     
  0.900
phoA
Alkaline phosphatase; Unnamed protein product; Belongs to the alkaline phosphatase family
  
 
 0.870
phoD2
Uncharacterized protein; Phosphodiesterase/alkaline phosphatase D
 
  
 
0.867
XCC0255
Nuclease; Predicted extracellular nuclease
 
  
 0.621
rsmG
Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA
       0.620
XCC2614
Uncharacterized protein; Predicted phosphatase
 
  
 0.596
XCC4234
Glycerophosphoryl diester phosphodiesterase
  
 0.513
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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