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xcc-b100_4240 protein (Xanthomonas campestris campestris) - STRING interaction network
"xcc-b100_4240" - Transposase and inactivated derivatives in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xcc-b100_4240Transposase and inactivated derivatives (187 aa)    
Predicted Functional Partners:
CAP53611.1
Rhs family protein (303 aa)
              0.671
CAP53612.1
Rhs family protein (1850 aa)
              0.668
ndpA
ndpA; Nucleoid-associated protein (393 aa)
   
          0.558
XCC3257
Xaa-Pro dipeptidase; Splits dipeptides with a prolyl residue in the C- terminal position (441 aa)
   
          0.529
rlmM
Ribosomal RNA large subunit methyltransferase M; Catalyzes the 2’-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily (347 aa)
   
          0.506
phoD2
Uncharacterized protein; Phosphodiesterase/alkaline phosphatase D (530 aa)
              0.440
CAP53608.1
Transposase and inactivated derivatives, IS30 family (273 aa)
              0.416
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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