STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP53627.1Glycerophosphoryl diester phosphodiesterase (360 aa)    
Predicted Functional Partners:
CAP53626.1
Parvulin-like peptidyl-prolyl isomerase
 
    0.781
CAP51862.1
Signal transduction kinase
  
     0.653
XCC1995
annotation not available
  
     0.640
XCC1041
Outer membrane receptor proteins, mostly Fe transport
  
     0.560
XCC3209
Outer membrane receptor proteins mostly Fe transport
  
     0.540
pilL
Chemotaxis protein histidine kinase and related kinases
   
   0.515
cheA2
Chemotaxis protein histidine kinase and related kinases
   
   0.513
cheA3
Chemotaxis protein histidine kinase and related kinases
   
   0.513
CAP51980.1
annotation not available
  
     0.495
repA
Uncharacterized protein conserved in bacteria
  
     0.494
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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