STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC4074Uncharacterized protein; Putative transcriptional regulator (797 aa)    
Predicted Functional Partners:
kdgR
Transcriptional regulator
     
 0.582
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
   
 
 0.513
XCC1258
Outer membrane receptor proteins mostly Fe transport
  
   
 0.510
XCC2153
Two-component system sensor protein; FOG: PAS/PAC domain
   
 
 0.499
XCC3686
Methyltransferase; Unnamed protein product
  
  
 0.454
XCC1522
annotation not available
  
    0.448
XCC1185
annotation not available
  
 
 0.446
XCC4076
Two-component system sensor protein; Na+/proline symporter
  
 
 0.435
mntP
Putative manganese efflux pump MntP; Probably functions as a manganese efflux pump
       0.433
XCC2360
Signal transduction histidine kinase
  
 
 0.420
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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