STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mxaF2Glucose dehydrogenase (575 aa)    
Predicted Functional Partners:
oma
Outer membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
   
 
 0.678
bamD
Outer membrane protein assembly factor BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
  
 
 0.654
XCC1742
annotation not available
   
 
 0.647
XCC0050
Outer membrane receptor proteins, mostly Fe transport
  
    0.630
XCC3476
Surface antigen protein
 
 
 
 0.609
avrBs2
Avirulence protein; Glycerophosphoryl diester phosphodiesterase,probable
 
     0.605
XCC2382
annotation not available
  
     0.598
pglA2
Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family
 
     0.588
XCC2360
Signal transduction histidine kinase
 
   
 0.565
XCC2078
annotation not available
  
   
 0.543
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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