STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC4085Predicted outer membrane protein (690 aa)    
Predicted Functional Partners:
XCC4084
Uncharacterized protein conserved in bacteria
 
 0.997
glyS
Glycyl-tRNA synthetase beta subunit
       0.717
imp
LPS-assembly protein LptD; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
  
   0.647
XCC3589
annotation not available
  
 
 0.635
XCC3590
annotation not available
  
 
 0.635
XCC0650
Uncharacterized protein; Predicted permeases
  
   0.612
XCC0651
Uncharacterized protein; Predicted permeases
  
   0.579
XCC1985
Uncharacterized protein conserved in bacteria
  
 
   0.573
yrbC
Toluene tolerance protein; ABC-type transport system involved in resistance to organic solvents auxiliary component
 
     0.562
zipA
Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins
  
 
   0.552
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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