STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
siaE2Sialic acid-specific 9-O-acetylesterase; Sialate degradation; Belongs to the glycosyl hydrolase 2 family (654 aa)    
Predicted Functional Partners:
aguA
Xylan alpha-1,2-glucuronidase; Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family
 
   
 0.964
xylB6
Xylosidase/arabinosidase; Hydrolyzes 1,4-beta-D-xylans to remove successive D-xylose residues from the non-reducing termini; Belongs to the glycosyl hydrolase 43 family
 
     0.957
bgl7
Glucan 1,4-beta-glucosidase; Beta-glucosidase-related glycosidases
 
   
 0.875
rspA
Starvation sensing protein; Enolase; Belongs to the mandelate racemase/muconate lactonizing enzyme family
       0.836
uxuB
Mannitol-1-phosphate/altronate dehydrogenases
     
 0.672
XCC4101
Sal operon transcriptional repressor; Transcriptional regulators
 
   
 0.669
CAP53683.1
annotation not available
       0.651
XCC4108
Uncharacterized protein; Type II restriction enzyme, methylase subunits
       0.651
xylB4
Xylosidase/arabinosidase; Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family
 
     0.601
XCC4120
Outer membrane receptor proteins mostly Fe transport
  
     0.558
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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