STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rspAStarvation sensing protein; Enolase; Belongs to the mandelate racemase/muconate lactonizing enzyme family (419 aa)    
Predicted Functional Partners:
uxuB
Mannitol-1-phosphate/altronate dehydrogenases
 
  
 0.991
kduD
2-deoxy-D-gluconate 3-dehydrogenase; Dehydrogenases with different specificities
 0.928
xylB6
Xylosidase/arabinosidase; Hydrolyzes 1,4-beta-D-xylans to remove successive D-xylose residues from the non-reducing termini; Belongs to the glycosyl hydrolase 43 family
       0.898
kdgK
Sugar kinases, ribokinase family
 
 
 0.852
bgl7
Glucan 1,4-beta-glucosidase; Beta-glucosidase-related glycosidases
       0.845
aguA
Xylan alpha-1,2-glucuronidase; Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family
       0.838
siaE2
Sialic acid-specific 9-O-acetylesterase; Sialate degradation; Belongs to the glycosyl hydrolase 2 family
       0.836
rpi2
Ribose 5-phosphate isomerase RpiB
  
 
  0.828
rpe
Pentose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family
     
  0.800
gnd
6-phosphogluconate dehydrogenase
     
  0.800
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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