STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylPTransport protein; Na+/melibiose symporter and related transporters (495 aa)    
Predicted Functional Partners:
xylB2
Xylosidase/arabinosidase; Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family
  
 0.952
glcP
MFS transporter; Permeases of the major facilitator superfamily; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
 
   
 0.755
XCC4120
Outer membrane receptor proteins mostly Fe transport
 
   
 0.682
xylB6
Xylosidase/arabinosidase; Hydrolyzes 1,4-beta-D-xylans to remove successive D-xylose residues from the non-reducing termini; Belongs to the glycosyl hydrolase 43 family
 
  
 0.577
nodB
Acetylxylan esterase; Predicted xylanase/chitin deacetylase
      
 0.503
xylB5
Xylosidase; Hydrolyzes 1,4-beta-D-xylans to remove successive D-xylose residues from the non-reducing termini; Belongs to the glycosyl hydrolase 43 family
 
  
 0.501
aes
Esterase/lipase
     
 0.491
xynA2
Beta-xylanase; Endohydrolyzes 1,4-beta-D-xylans
 
   
 0.487
gudP
Putative hexuronate transporter; Permeases of the major facilitator superfamily
 
   
 0.484
xylB4
Xylosidase/arabinosidase; Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family
 
  
 0.473
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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