STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC4123Outer membrane lipoprotein; Bacterial lipocalin (182 aa)    
Predicted Functional Partners:
cfa2
Uncharacterized protein; Cyclopropane fatty acid synthase and related methyltransferases
 
    0.688
tolA
annotation not available
      
 0.603
tolR
TolR protein; Biopolymer transport protein
      
 0.582
XCC1330
annotation not available
 
    0.570
XCC1327
Predicted membrane protein
 
    0.536
XCC1331
Dehydrogenase; Predicted NAD/FAD-binding protein
 
    0.515
XCC1328
annotation not available
 
     0.503
tolQ
TolQ protein; Biopolymer transport proteins
      
 0.489
ompW1
Outer membrane protein W
      
 0.480
cfa1
Cyclopropane fatty acid synthase and related methyltransferases
 
    0.453
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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